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Question: in silico AsiSI digestion of human genome
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gravatar for zhigang2
7 weeks ago by
zhigang2 • 0
zhigang2 • 0 wrote:

Hi, I need to generate a file with the coordinates of sites in the human genome from an in silico AsiSI digestion. Is there a tool in Galaxy for this purpose? I know that people can use "restrict" in EMBOSS, but I don't know how to do it. Thanks a lot!

Jin
galaxy • 102 views
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modified 7 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 7 weeks ago by zhigang2 • 0
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gravatar for Jennifer Hillman Jackson
7 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi,

The EMBOSS tool suite hasn't been updated in the Galaxy wrappers to version 6+ (it is at version 5), so some tools won't be wrapped. https://toolshed.g2.bx.psu.edu/view/devteam/emboss_5/8992d258e42f.

The most current EMBOSS tools are described here and some will be in Galaxy and others not, or not yet. http://emboss.sourceforge.net/apps/. If someone wanted to contribute to the development to update the wrappers, that would be welcomed.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 7 weeks ago by Jennifer Hillman Jackson ♦ 25k
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