Question: Annovar is returning a file with only headers
10 weeks ago by
hina.sultana • 0
hina.sultana • 0 wrote:
I am trying to do some variant analysis. I have mapped the reads using hg19 as reference through BWA MEM and then performed variant calling by FreeBayes. Now I am trying to annotate the variants using ANNOVAR, but it is returning a file with only headers. This is my first time using ANNOVAR so may be I am making some mistake. I am not sure what I should select for gene annotations, annotation regions and annotation databases.
ADD COMMENT • link •modified 10 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 10 weeks ago by hina.sultana • 0