Question: How to set up Conda properly for first run?
1
gravatar for seungminkim
8 weeks ago by
seungminkim20
seungminkim20 wrote:

I have a system with Python 2.6 (and I dont have sudo) as default.
In order to make run.sh execution possible, I installed conda in another folder, and put in PATH=/anacondafolder/bin:$PATH at the top of run.sh.
It creates an environment galaxy_18.05 under the folder conda is installed, and then installs many packages with pip.
When it downloaded all packages, it spit out a message that some packages: "It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall."
This is definitely because of the preinstalled conda packages.
How should I properly set up Galaxy so it runs correctly at first run?
Thank you in advance.

software error galaxy • 135 views
ADD COMMENTlink written 8 weeks ago by seungminkim20

Hi - So we can help troubleshoot, could you post back the full error message/start-up log? You can redact anything sensitive. Pasting into a Gist or similar would help to preserve formatting and allow for a longer message. Please do that then post the link back as a comment.

https://gist.github.com/

Thanks! Jen, Galaxy team

ADD REPLYlink written 8 weeks ago by Jennifer Hillman Jackson25k

Abled to resolve by downgrading the pip version.

ADD REPLYlink written 6 weeks ago by seungminkim20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 96 users visited in the last hour