Question: How to set up Conda properly for first run?
1
gravatar for seungminkim
5 days ago by
seungminkim10
seungminkim10 wrote:

I have a system with Python 2.6 (and I dont have sudo) as default.
In order to make run.sh execution possible, I installed conda in another folder, and put in PATH=/anacondafolder/bin:$PATH at the top of run.sh.
It creates an environment galaxy_18.05 under the folder conda is installed, and then installs many packages with pip.
When it downloaded all packages, it spit out a message that some packages: "It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall."
This is definitely because of the preinstalled conda packages.
How should I properly set up Galaxy so it runs correctly at first run?
Thank you in advance.

software error galaxy • 36 views
ADD COMMENTlink written 5 days ago by seungminkim10

Hi - So we can help troubleshoot, could you post back the full error message/start-up log? You can redact anything sensitive. Pasting into a Gist or similar would help to preserve formatting and allow for a longer message. Please do that then post the link back as a comment.

https://gist.github.com/

Thanks! Jen, Galaxy team

ADD REPLYlink written 3 days ago by Jennifer Hillman Jackson25k
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