Question: Uploaded filename extension
0
gravatar for harryln
3 months ago by
harryln10
harryln10 wrote:

Dear Sir/Madam, I use 'Get Data' to upload a bunch of mzXML files. The uploaded file extension is changed as '.dat'. Unfortunately my software cannot accept this extension. Would someone kindly tell me how to rename back these multiples' extension in <command>...</command> section or just upload files while keeping the original file name/extension? Many thanks.

upload galaxy datatype • 179 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by harryln10
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Excel data files are not a datatype that Galaxy accepts. Try exporting the data in tabular format and uploading it into Galaxy in that format.

FAQs: https://galaxyproject.org/support/

Galaxy tutorials: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson25k
0
gravatar for harryln
3 months ago by
harryln10
harryln10 wrote:

Dear Jennifer, Many thanks for your reply. Actually my input is mzML, not Excel data. Instead of renaming file extension, I link these files to mzML after searching other people's galaxy codes by:

 #for $file in $mzxml_file:
      ln -s ${file} ${file}.mzXML &&
 #end for

Many thanks again.

ADD COMMENTlink written 3 months ago by harryln10
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