Question: ChIPseq vs RNAseq comparison
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gravatar for VY
14 days ago by
VY120
London
VY120 wrote:

Hello,

I have a number of RNAseq bigwigs and ChIPseq bigwigs and would like to compare overall how counts in one location compare to counts in the same location in the contrasting experiment. To plot literally something like the figure here :

https://www.nature.com/articles/nn.4532/figures/14

Does someone know how I could go about doing this? What software and or package to use on galaxy? Thanks

rna-seq chip-seq • 46 views
ADD COMMENTlink modified 13 days ago by Bjoern Gruening5.1k • written 14 days ago by VY120
1
gravatar for Bjoern Gruening
13 days ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Could you use deeptools for this or https://github.com/deeptools/pyGenomeTracks ?

ADD COMMENTlink written 13 days ago by Bjoern Gruening5.1k
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