Question: Unable to view HTML FASTQC files at local galaxy instance
1
gravatar for Bigchipichip
3 months ago by
Bigchipichip10
Bigchipichip10 wrote:

Hi,

I am unable to view correctly 'FASTQC html report' on my galaxy local instance. It doesn't display the graphs or results. Instead shows:

'FastQC Report @media screen { div.summary { width: 18em; position:fixed; top: 3em; margin:1em 0 0 1em; } div.main { display:block; position:absolute; overflow:auto; height:auto; width:auto; top:4.5em; bottom:2.3em; left:18em; right:0; border-left: 1px solid #CCC; padding:0 0 0 1em; background-color: white; z-index:1; } div.header { background-color: #EEE; border:0; margin:0; padding: 0.5em; font-size: 200%; font-weight: bold; position:fixed; width:100%; top:0; left:0; z-index:2; } div.footer { background-color: #EEE; border:0; margin:0; padding:0.5em; height: 1.3em; overflow:hidden; font-size: 100%; font-weight: bold; position:fixed; bottom:0; width:100%; z-index:2; } img.indented { margin-left: 3em; } } @media print { img { max-width:100% !important; page-break-inside: avoid; } h2, h3 { page-break-after: avoid; } div.header { background-color: #FFF; } } body { font-family: sans-serif; color: #000; background-color: #FFF; border: 0; margin: 0; padding: 0; } div.header { border:0; margin:0; padding: 0.5em; font-size: 200%; font-weight: bold; width:100%; } #header_title { display:inline-block; float:left; clear:left; } #header_filename { display:inline-block; float:right; clear:right; font-size: 50%; margin-right:2em; text-align: right; } div.header h3 { font-size: 50%; margin-bottom: 0; } div.summary ul { padding-left:0; list-style-type:none; } div.summary ul li img { margin-bottom:-0.5em; margin-top:0.5em; } div.main { background-color: white; } div.module { padding-bottom:1.5em; padding-top:1.5em; } div.footer { background-color: #EEE; border:0; margin:0; padding: 0.5em; font-size: 100%; font-weight: bold; width:100%; } a { color: #000080; } a:hover { color: #800000; } h2 { color: #800000; padding-bottom: 0; margin-bottom: 0; clear:left; } table { margin-left: 3em; text-align: center; } th { text-align: center; background-color: #000080; color: #FFF; padding: 0.4em; } td { font-family: monospace; text-align: left; background-color: #EEE; color: #000; padding: 0.4em; } img { padding-top: 0; margin-top: 0; border-top: 0; } p { padding-top: 0; margin-top: 0; }' FastQCFastQC Report Wed 20 Jun 2018

There is no problem in viewing the 'FASTQC text files'. Could it be a problem with the installation of FASTQC?

Thanks for the help.

whitelist html galaxy local fastqc • 150 views
ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson25k • written 3 months ago by Bigchipichip10
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Check off the tool on the Admin > Tool Management > Manage whitelist. HTML content is blocked from upload/display by default for security reasons. Restart the server after and the proper display will render.

If you have more than one version of the tool installed, each will need to be checked off. Any other tools that you have installed that also produce HTML can also be checked off to allow full display.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson25k
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