4 months ago by
You are using Degust line-command or through a web portal, correct? This prior post is still true, in short, the tool is not fully wrapped for Galaxy yet: https://biostar.usegalaxy.org/p/10966/
Tool manual and input format documentation (updated link versus prior Q&A above): http://degust.erc.monash.edu/
Tabular data (count tool output) can be merged with a few different tools, search in the tool panel with the keyword "join" to find the choices. If your count data was created in Galaxy, then you wouldn't have
csv output, but a
tabular format to start with and that should be retained for joining and other changes needed to get the file into the specification (content, column ordering, adding in a header line). After, tools in the group Text Manipulation can transform data in many ways, including with sed and awk for custom manipulations. Converting tabular data to cvs data does not have a distinct tool as csv format it is rarely used with wrapped Galaxy tools.
For example text manipulation/join functions, please see the Galaxy 101 tutorial: https://galaxyproject.org/learn/
Thanks! Jen, Galaxy team