Question: How to change label id within integrated_tool_panel.xml for local galaxy instance?
0
gravatar for purvakulkarni7
5 months ago by
purvakulkarni710 wrote:

Hi,

I am running a local galaxy instance. I recently installed multiple tools within this instance using the tool shed. However, all the recently installed tools are present under the header "DEPRECATED". Why is it so? When I try add a new header for this set of tools in the integrated_tool_panel.xml, the changes are not reflected in the local galaxy instance. Could someone help me with this?

Currently the part of the integrated_tool_panel.xml looks like the following:

 <label id="deprecated" text="DEPRECATED" version="" />
    <section id="gatk" name="NGS: GATK Tools (beta)" version="">
    </section>
    <section id="preprocessing" name="Preprocessing" version="">
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.1.1" />
        <tool id="toolshed.g2.bx.psu.edu/repos/mmonsoor/camera_combinexsannos/abims_CAMERA_combinexsAnnos/2.2.2" />
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.2" />
</section>

And, I am making the following change to it (see line 4 of the code):

 <label id="deprecated" text="DEPRECATED" version="" />
    <section id="gatk" name="NGS: GATK Tools (beta)" version="">
    </section>
<label id="massspectratools" text="MASS SPECTRA TOOLS" version="" />
    <section id="preprocessing" name="Preprocessing" version="">
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.1.1" />
        <tool id="toolshed.g2.bx.psu.edu/repos/mmonsoor/camera_combinexsannos/abims_CAMERA_combinexsAnnos/2.2.2" />
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.2" />
</section>
tool_panel galaxy local • 158 views
ADD COMMENTlink modified 5 months ago • written 5 months ago by purvakulkarni710
1
gravatar for purvakulkarni7
5 months ago by
purvakulkarni710 wrote:

I found the solution for this here: https://biostar.usegalaxy.org/p/20634/

ADD COMMENTlink written 5 months ago by purvakulkarni710
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour