Question: How to change label id within integrated_tool_panel.xml for local galaxy instance?
0
gravatar for purvakulkarni7
9 weeks ago by
purvakulkarni710 wrote:

Hi,

I am running a local galaxy instance. I recently installed multiple tools within this instance using the tool shed. However, all the recently installed tools are present under the header "DEPRECATED". Why is it so? When I try add a new header for this set of tools in the integrated_tool_panel.xml, the changes are not reflected in the local galaxy instance. Could someone help me with this?

Currently the part of the integrated_tool_panel.xml looks like the following:

 <label id="deprecated" text="DEPRECATED" version="" />
    <section id="gatk" name="NGS: GATK Tools (beta)" version="">
    </section>
    <section id="preprocessing" name="Preprocessing" version="">
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.1.1" />
        <tool id="toolshed.g2.bx.psu.edu/repos/mmonsoor/camera_combinexsannos/abims_CAMERA_combinexsAnnos/2.2.2" />
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.2" />
</section>

And, I am making the following change to it (see line 4 of the code):

 <label id="deprecated" text="DEPRECATED" version="" />
    <section id="gatk" name="NGS: GATK Tools (beta)" version="">
    </section>
<label id="massspectratools" text="MASS SPECTRA TOOLS" version="" />
    <section id="preprocessing" name="Preprocessing" version="">
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.1.1" />
        <tool id="toolshed.g2.bx.psu.edu/repos/mmonsoor/camera_combinexsannos/abims_CAMERA_combinexsAnnos/2.2.2" />
        <tool id="toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.2" />
</section>
tool_panel galaxy local • 58 views
ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by purvakulkarni710
1
gravatar for purvakulkarni7
9 weeks ago by
purvakulkarni710 wrote:

I found the solution for this here: https://biostar.usegalaxy.org/p/20634/

ADD COMMENTlink written 9 weeks ago by purvakulkarni710
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