Question: Downloaded .ssr file cannot be opened in Galaxy
0
gravatar for h.stotz
4 months ago by
h.stotz20
European Union
h.stotz20 wrote:

Good afternoon,

I successfully accessed a public RNAseq dataset as an .srr file into Galaxy. However, I cannot open this file and now I am downloading the .sra file on my local computer to upload it again into Galaxy. There must be an easier way.

Kind regards,

Henrik

get-data upload rna-seq sra srr • 138 views
ADD COMMENTlink modified 4 months ago by Jennifer Hillman Jackson25k • written 4 months ago by h.stotz20
0
gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Galaxy accepts sra formatted data, not srr.

Use the tool Get Data > EBI SRA to extract the data directly to Galaxy. Or, if a sra FTP link is available (EBI SRA, or another public source), copy the URL into the Upload tool. No need to download it locally and then upload.

FAQ: https://galaxyproject.org/support/#basics

  • Loading Data

Related post with even more details: https://biostar.usegalaxy.org/p/28349/

Thanks! Jen, Galaxy team

ADD COMMENTlink modified 4 months ago • written 4 months ago by Jennifer Hillman Jackson25k
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