Problem updating Galaxy 18.01 to 18.05 when switching from .ini to .yaml admin config

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Question: Problem updating Galaxy 18.01 to 18.05 when switching from .ini to .yaml admin config

6 months ago by

hoky.kim • 20

hoky.kim • 20 wrote:

I attempted to update an existing Galaxy repository run from release 18.01 to release 18.05

It throws the following error

config/galaxy.ini.sample: needs merge
error: you need to resolve your current index first

I did convert galaxy.ini to yaml file with the command "make config-convert". Am I supposed to delete galaxy.ini.sample file?

18.01 admin yaml galaxy 18.05 • 260 views

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modified 5 months ago by Hotz, Hans-Rudolf • 1.8k • written 6 months ago by hoky.kim • 20

5 months ago by

Hotz, Hans-Rudolf • 1.8k

Switzerland

Hotz, Hans-Rudolf • 1.8k wrote:

I don't think converting your 'galaxy.ini' file to a yaml file is related to this error. It rather looks to me, as if you have modified the 'galaxy.ini.sample' ? I suggest to re-name 'galaxy.ini.sample' (eg: 'galaxy.ini.sample.copy') and try the update again

Hans-Rudolf

ADD COMMENT • link written 5 months ago by Hotz, Hans-Rudolf • 1.8k

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