Question: Blastn: Nameerror: Name 'Cmd' Is Not Defined
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gravatar for Sergei Ryazansky
7.4 years ago by
Sergei Ryazansky • 40 wrote:
Hello all, First of all I would like to thank you guys for developing and mainting this so useful tool as Galaxy! I have our own installation fo Galaxy (galaxy-dist version) with ncbi-blast-plus. Calling blastn results to the following error message: An error occurred running this job:*Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/ncbi_blast_plus/hide_stderr.py", line 29, in <module> sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err)) NameError: name 'cmd' is not defined* * * Could you please explain, what this error can mean? The link to the shared history is* * http://dmbcserv.dyndns.org:8080/u/hogart/h/test-of-blast* * * * Thank you in advance!
galaxy • 1.3k views
ADD COMMENT • link • modified 7.4 years ago by Kanwei Li • 270 • written 7.4 years ago by Sergei Ryazansky • 40
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gravatar for Kanwei Li
7.4 years ago by
Kanwei Li • 270
Kanwei Li • 270 wrote:
Hi Sergei, This is a bug in the script, I will ask Peter, the author, to look into it. Thanks! K
ADD COMMENT • link written 7.4 years ago by Kanwei Li • 270
Thanks for answer, but I have just updated the galaxy source code and blastn works fine! Sorry for any inconvenience :) 30.06.2011 22:53, Kanwei Li пишет:
ADD REPLY • link written 7.4 years ago by Sergei Ryazansky • 40
It was an error in the wrapper script's error handler, already fixed. Peter
ADD REPLY • link written 7.4 years ago by Peter Cock • 1.4k
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