Similar posts • Search »

• How to join to data-sets correctly?
  Hi, I'm having difficulty in joining to data-sets to find the number of repeats in coding exons i...
• History Items Remain Pending (Grey Color)
  Dear Galaxy Users, Forgive me in advance, but I am a VERY new Galaxy user! I am trying to go th...
• How To Calculate Gc Content Of Transcripts Only Including Exons From A Gtf File
  Hi everyone, I want to calculate GC content of transcripts in the gtf file like this: chr1 Cuff...
• Question About Extract Intron Sequences From [Gtf File] + [Genome Fasta File]
  Dear Jen, I am not much of a Galaxy user yet. Some days ago I know something about Galaxy and fo...
• Exon number ucsc or other
  Hello, I am wondering how can i find exon number using regions start-end for 100 exons at the...
• Seattleseq annotation output question
  I am a pharmacology graduate with no bioinformatic training, but have been making my way slowly a...
• extraxt interval from maf
  I have a maf file like this : ##maf version=1 # emf2maf.pl v1.0.1 from file /lustre/scratch109/...
• finding the number and positions of exons and introns
  hi I have a CDS sequence and I need to know about the number and positions of exons and introns C...
• How to find exonic and intronic regions from a set of coordinates?
  Hey, could anyone please help me with it? I have few coordinates of different chromosomes. I want...
• Which Tool To Use For Extract Exon, Codon Information
  Hi, I am new to galaxy but I think your tools may be what I need. I simply have a .bed file wit...
• Chromosome Coordinates to Annotation
  Hello, If I have specific chromosome coordinates, how do I find out if this region is Exon or In...
• Help: Determining The Exon Number Of Exonic Variants
  Hi everyone, I have a list of genomic coodinates corresponding to exonic variants, and I'd like ...
• differential expression exon-level
  Hi everybody, I've been using cufflinks in order to perform differential expression between to g...
• Constitutive Exon Workflow?
  Hi folks, I'm trying to find over the entire human genome, for each gene, which exons are the mos...
• Question About Extracting Information From Ceas Run Results
  I have run a ChIPseq work flow in galaxy, At teh end I ran CEAS: Enrichment on chromosome and ann...
• Using Gatk Depthofcoverage With All Exon Enriched Data
  Hi, I have NGS results of DNA enriched for exons with an AllExon kit (Agilent). I have a bed fil...
• transcription start site
  Hi, I wonder about the definition of transcription start site.. assuming that the first exon con...
• htseq-count failed with error no exon found
  I am having trouble with htseq-count. My gff file i.e. [brassica juncea .gff file][1] does not co...
• How to run a multiple hypothesis test on genomic data in galaxy
  Hello! I am trying to answer some very broad questions with some chromosomal genomic data. So fa...
• Finding Constitutive Exons Using Expression Data
  Hi, I'm trying to find over the entire human genome, for each gene, which exons are the most cons...
• Importing Gtf Into Galaxy
  Hi, I have been trying to get reference data from the ucsc browser into Galaxy, but when I try ...
• RNAseq exon count
  Hej, I have an RNAseq dataset (single end) from a mouse model heterozygous for a trapped-gene. Th...