Question: Understanding and decoding SAM or BAM flags
1
gravatar for jailyn.han
3 months ago by
jailyn.han10
jailyn.han10 wrote:

i want to know the Exclude reads based on the SAM flag set 1796, what is means? how i can choice the number?

ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson25k • written 3 months ago by jailyn.han10
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The flag in a SAM/BAM dataset describes the alignment.

Format specification: https://samtools.github.io/hts-specs/SAMv1.pdf

Good (even if older) post with some key points summarized: https://www.biostars.org/p/60765/. Try the link in the second reply - the web tool accepts a flag and decodes it.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson25k
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