Question: How to covnvert gene id to gene names
gravatar for shikhascorpio4
6 months ago by
shikhascorpio40 wrote:

Hi, I have been using Tophat, cufflink, cuffmerge and cuffdiff to analyse RNA seq data. I have been getting this test_id gene_id gene XLOC_000041 XLOC_000041 gene10113-v1.0-hybrid Is there a way that i can convert them into gene names. I have searched ensemble plants (was planning to use biomart ) too but my genus does not exist there.

Thanks in advance for your help and suggestions

ADD COMMENTlink modified 6 months ago by Jennifer Hillman Jackson25k • written 6 months ago by shikhascorpio40
gravatar for Jennifer Hillman Jackson
6 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Double check your reference annotation file (GTF or GFF3). Make sure it has the attributes tss_id, p_id, and gene_name, for full statistics and incorporation of the annotation.

Variations of this question have been asked many times before -- so please review the prior Q&A for more details. Examples:,,

Current Galaxy RNA-seq tutorials:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 6 months ago by Jennifer Hillman Jackson25k
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