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• How can I do trimming off to all nucleotide sequences that end with a specific sequence in my illumine reads?!
  Hello everyone, I am new to Galaxy and I was wondering if anybody knows how can I trim all seque...
• GO specific terms
  Hi All, I have ensemble ids and i want to find the specific terms associated with it, I used bio...
• Quick Question About Cuff Compare
  Hi! Just a quick question.... I am trying to use cuffcompare for human data and want to use a Se...
• Snp Finding
  Dear galaxy users, We have done deep sequencing on some known genomic loci using Hiseq2000. I...
• How can I get the specific locus of the Bam file
  Hello everyone I want to find a specific locus from bam file on Galaxy, and indeed want to know ...
• clear overrepresented reads that arent adaptadors
  I am working in galaxy and I mapped the sequences with a genome of reference but the result show ...
• Work with protein sequence in snpeff?
  Hi, I am knew to bioinformatics and I would like to know if it is possible to run the snpeff on ...
• How To Find Out Snps And Point Mutations In Rna-Seq Data Using Galaxy?
  HI, I am new to the RNA-seq, and the only available sources for me to do analysis is the Galaxy s...
• GENE AND CHROMOSOME SEARCHES
  HI I WAS WONDERING ONCE YOU LOAD UP A VCF FILE HOW DO YOU LOOK AT SPECIFIC AREAS AND CHROMOSOMES...
• Megablast
  I have a large set of short reads (from human) that I'm trying to analyze with galaxy. Specifical...
• Extracting Sequences with coordinates directly from the human genome(hg19), using biopython or Galaxy
  Hi! I am not able to enter the build number in 'Fetch Sequences for intervals in' section in the ...
• Where can I find the Trinity statistics?
  Hi, This is maybe a stupid question, but I am new to RNA sequencing and the Galaxy environment -...
• How to get only paired end or single end uniquely mapped reads with Bowtie2?
  Hello, I am using bowtie2 on galaxy to map ChIP-seq single end and paired end libraries to a ref...
• Random Forest / SVM with radial Kernel
  I want to recreate this: https://github.com/rdpstaff/classifier (machine learning of k-mer to id...
• FreeBayes database/build database?
  What if I cannot find my reference sequence in the database/Build option when I want to check the...
• Can't use cached bed file
  Hey, I wanted to have built-in BED files specific to the genome references that I added to my lo...
• how to find adaptor sequences
  Hi    How can i find the adaptor sequence in my reads.
• Assembly of whole genome sequence
  Hi, I wanted to do genome assembly of E.coli whole genome sequences (both end reads), but I did ...
• Problems loading plant genome data using GrameneMart
  I am using Get Data : GrameneMart central server Galaxy tool facility at (https://usegalaxy.org) ...
• Could Not Find The Refseq From Database List
  Hi, I am using Galaxy to analyze Chlamydia trachomatis F/SW4 illumina sequence. We could not ...