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Question: "Analyses of metagenomics data - The global picture"-tutorial
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gravatar for laura_klausen
8 months ago by
laura_klausen • 0
laura_klausen • 0 wrote:

Hi, I'm doing the tutorial "Analyses of metagenomics data - The global picture", and are supposed to use the MetaPhlAN2-tool, but it is no longer available. What can i use instead?
metaphlan2 gtn metagenomics taxonomy • 350 views
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modified 8 months ago by Jennifer Hillman Jackson ♦ 25k • written 8 months ago by laura_klausen • 0
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gravatar for Jennifer Hillman Jackson
8 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

To work through the tutorial, the tool is available in the Docker Galaxy available for training:

Or for use in your own Galaxy from the Main Tool Shed:

Or can be used at Galaxy EU:

If you have question or problems with the tutorial, tool, or Docker image, please contact the authors through the Galaxy Training Network (GTN) on Gitter:

Thanks! Jen, Galaxy team
ADD COMMENT • link written 8 months ago by Jennifer Hillman Jackson ♦ 25k

You rock Jen !!!!!!!

ADD REPLY • link written 8 months ago by Bjoern Gruening ♦ 5.1k

Hi, Jen I have my galaxy instance installed on my server now. I am now the admin and able to install tools from the toolshed. Now, my problem is that I could not run "MetaPhlAn2" due to I cannot input the right file into "Cached database with clade-specific marker genes", because it did not allow to do it. But I can do so on the Galaxy Europe instance.

So, how can I get this file?

Bests

Dr yan

ADD REPLY • link written 8 months ago by yanzejunedin • 0
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