Question: UCSC Genome Browser not loading VCF files
gravatar for ajimenez
20 days ago by
ajimenez10 wrote:

Since 23 Feb I cannot view my VCF files on the UCSC Genome Browser. When I click on the Main link the browser opens, but the user track just shows the address of the link (http...) and not the variants. This problem only happens when I try to load my previous VCF files (1-3 weeks old). The files themselves are fine, since they can be displayed properly when I use them out of Galaxy.

ADD COMMENTlink modified 16 days ago • written 20 days ago by ajimenez10

Hi - I am doing some testing. More feedback soon and thanks for reporting the problem. Jen, Galaxy team

ADD REPLYlink written 17 days ago by Jennifer Hillman Jackson24k
gravatar for ajimenez
16 days ago by
ajimenez10 wrote:

Today I have checked the VCF files again and one of them (produced with snpEff) has worked fine after been reloaded by the browser. The other two VCF files (produced with Varscan and Freebayes) still do not work and just show the link (http...).

ADD COMMENTlink written 16 days ago by ajimenez10
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