Question: Zebrafish Genome on HISAT2
0
gravatar for jacantu
3 months ago by
jacantu0
jacantu0 wrote:

Hello,

The reference genome for zebrafish (D. Rerio) is missing from Hisat2. Could this be added?

Thanks,

JC

ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson25k • written 3 months ago by jacantu0
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Yes, we are targetting danRer10 and other UCSC genomes for indexing near-term for HISAT2, BWA, RNA STAR.

Meanwhile, a custom genome can be used. This is how:

Related tracking tickets:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson25k
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