Question: Getting other supported reference genomes for NGS plot on local galaxy
0
gravatar for rossillom
6 months ago by
rossillom0
rossillom0 wrote:

Hello, I have downloaded the gz tar of the ce10 build for ngs plot but I am not sure how to get it to show up as an option on my local instance of galaxy? Thanks Mary

admin install local ngs plot • 248 views
ADD COMMENTlink modified 6 months ago by Jennifer Hillman Jackson25k • written 6 months ago by rossillom0

Hi - Are you using tools from the DeepTools group? Which one? Or if a different plotting tool, which? The full tool name with the version included would help. This name/version is at the top of the tool form.

Thanks!

ADD REPLYlink written 6 months ago by Jennifer Hillman Jackson25k

It's separate from DeepTools, it's called ngs plot, version 1. It's only available on galaxy local not the main server.

ADD REPLYlink written 6 months ago by rossillom0
0
gravatar for Jennifer Hillman Jackson
6 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Thanks, I found the tool: https://toolshed.g2.bx.psu.edu/view/kosrou/ngs_plot/b848d0eb3841

It is an older tool submitted by a community contributor. I haven't used/configured it myself. This is the author's only tool, it doesn't have a readme or install instructions, and there are no associated tool tests or a linked development repository.

If you still want to try to use this tool, contact the tool author for installation/config help through the Tool Shed (login or create an account > navigate to the tool (or use the link above) > Pick "contact author" from the Repository Actions menu.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 6 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 137 users visited in the last hour