Question: Using filename as a tool variable
0
gravatar for d.hand
3 months ago by
d.hand0
d.hand0 wrote:

I know you can use #{input} in the workflow editor to change the name of the output files, however is it possible to feed this into the tools as well? I've tried to use it in the tool options such as graph label:"#{input}" or name:"#{input}", but this doesn't work.

I assume this is because galaxy has no way to feed this unless the tools are designed for it?

tool variable name wrapper dataset • 151 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by d.hand0
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Correct, the tool wrapper must be written in a way that consumes input file names as options/variables.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson24k
0
gravatar for d.hand
3 months ago by
d.hand0
d.hand0 wrote:

Is there any conceivable workaround for renaming a single fasta header with the inputfile? other than making my own tool?

ADD COMMENTlink written 3 months ago by d.hand0
0
gravatar for d.hand
3 months ago by
d.hand0
d.hand0 wrote:

Is there any conceivable workaround for renaming a single fasta header with the inputfile? other than making my own tool?

ADD COMMENTlink written 3 months ago by d.hand0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 94 users visited in the last hour