Question: Trinity run ended with error
0
gravatar for nd1091
5 months ago by
nd10910
nd10910 wrote:

Hello, My trinity run ended with an error saying "tool error An error occurred with this dataset: Remote job server indicated a problem running or monitoring this job." I have no idea what should be done regarding this matter. Anyone else with similar issue? Nihar

trinity rna-seq • 208 views
ADD COMMENTlink modified 5 months ago • written 5 months ago by nd10910
1
gravatar for Jennifer Hillman Jackson
5 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The size of the input fastq datasets is very large (~40 GB each). This creates a job that is too large to process at Galaxy Main https://usegalaxy.org.

Thanks, Jen, Galaxy team

ADD COMMENTlink modified 5 months ago • written 5 months ago by Jennifer Hillman Jackson25k
0
gravatar for nd1091
5 months ago by
nd10910
nd10910 wrote:

Jen, Thank you very much for replying. As I have concatenated all my left and right files together in separate files that is why the size is too big. I can reduce number of dataset to make it work, just wondering what is the largest size of data I can use to run trinity!! Regards, Nihar

ADD COMMENTlink written 5 months ago by nd10910
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