Question: (Closed) CLI tool to extract FASTA sequence from a .ab1 file
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gravatar for skhan
4 months ago by
skhan30
skhan30 wrote:

Hi there,

I have a few hundred .AB1 files, with their associated .PHD.1 files. I can successfully open each .AB1 files in UGene as well as FinchTV and extract a .SEQ file (plain FASTA file) manually. However, this involved a lot of mouse clicks.

Does anyone know of command line tool for extracting the sequence from a .AB1 file?

Thanks! skhan

.ab1 • 129 views
ADD COMMENTlink written 4 months ago by skhan30

Hello skhan!

We believe that this post does not fit the main topic of this site.

Galaxy does not have tools to extract this data. For help, review prior Q&A at http://seqanswers.com/ or https://www.biostars.org/, there is much discussion about this exact topic.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 4 months ago by Jennifer Hillman Jackson25k
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