Question: Unicycler jobs - "This job is waiting to run" for 2 days
0
gravatar for kapsakcj
7 months ago by
kapsakcj10
kapsakcj10 wrote:

Is there something wrong with the computing clusters? I submitted this job almost 48 hours ago and nothing has changed in the sidebar.

I'm wondering if this issue is because of something I did wrong on my end or if I need to simply be patient and wait for my job to run.....

I'm new to using Galaxy as well as Unicycler, so I wasn't sure.

Thanks, Curtis

software error • 232 views
ADD COMMENTlink modified 27 days ago by daschiemann20 • written 7 months ago by kapsakcj10
2
gravatar for Jennifer Hillman Jackson
7 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The problem with both Trinity and Unicyler jobs right now are server-side. We are working on the correction with our partners at PCS Bridges (who run the cluster these jobs run on).

Follow progress on updates here:

Thanks for reporting the problem! Jen, Galaxy team

ADD COMMENTlink written 7 months ago by Jennifer Hillman Jackson25k
1

Hi Jen,

Thanks for the update! I appreciate it.

Curtis

ADD REPLYlink written 7 months ago by kapsakcj10
2
gravatar for daschiemann
27 days ago by
daschiemann20
daschiemann20 wrote:

same problem. Have been waiting for two days and nothing happens

ADD COMMENTlink written 27 days ago by daschiemann20

Thanks for reporting the issue - we'll check the cluster status and get back to you. Thanks, Jen, Galaxy team

ADD REPLYlink written 27 days ago by Jennifer Hillman Jackson25k

It does look like there is a cluster problem. Our admin is out today so it may be until Monday before this is fixed.

Tracking ticket with details: https://github.com/galaxyproject/usegalaxy-playbook/issues/152

That ticket will update once things are fixed and I'll also post back here and close this out once resolved.

Thanks for reporting the problem & please leave your jobs queued (do not delete/rerun). If our admin resets the cluster connection, the jobs will execute without any action on your part (usually!). This preserves your current placement in the queue.

ADD REPLYlink written 27 days ago by Jennifer Hillman Jackson25k

The ticket has been updated, both Trinity and Unicycler were impacted, and this is what it states:

Update - the jobs should be successful now but we are still running a few more tests before closing this out.

If your original job failed with an error like:

> Remote job server indicated a problem running or monitoring this job

Please rerun it. The failure was likely due to small adjustments made during the correction.
ADD REPLYlink modified 27 days ago • written 27 days ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 129 users visited in the last hour