Question: Can I submit the next step when this step is still processing (yellow)
0
gravatar for 18Kbeyond
19 days ago by
18Kbeyond20
New York
18Kbeyond20 wrote:

Hi. Is it safe to submit the next step B whose input is the output of A when this step A is still processing (file in yellow) or even waiting (file in grey)?

I want to do this because I want to submit jobs all in once so that galaxy can automatically starts the next step B when A is finished, so that I don't have to keep watching for A to finish running (file in green) then start the next step B.

yellow workflow • 73 views
ADD COMMENTlink modified 18 days ago • written 19 days ago by 18Kbeyond20

If you have already executed your analysis steps (A history). You can build a workflow from this one and then just run it with your new inputs. Each step needing an input should wait for it.

ADD REPLYlink written 18 days ago by bensellak0
2
gravatar for Martin Čech
19 days ago by
Martin Čech ♦♦ 4.3k
United States
Martin Čech ♦♦ 4.3k wrote:

The way this is done is called a workflow and you can reach the interface to build them from the top Galaxy menu.

Read more here: https://galaxyproject.org/learn/advanced-workflow/

edit: it is also safe to do it manually as you described, the workflow is a superior solution though

ADD COMMENTlink modified 19 days ago • written 19 days ago by Martin Čech ♦♦ 4.3k
0
gravatar for 18Kbeyond
18 days ago by
18Kbeyond20
New York
18Kbeyond20 wrote:

Found it here https://galaxyproject.org/learn/advanced-workflow/extract/ Thanks guys!

ADD COMMENTlink written 18 days ago by 18Kbeyond20
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