Question: RNA STAR job error
gravatar for k.makwana
3 months ago by
k.makwana0 wrote:

Hello, I am trying to RNA STAR aligner on pair end reads with inbuilt index but I am getting error:

  Transcriptome.cpp:51:Transcriptome: exiting because of INPUT FILE error: could not open input file /cvmfs
error job rna-seq input hisat2 • 153 views
ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson24k • written 3 months ago by k.makwana0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson24k wrote:


I've only seen this error come up when a reference annotation database was not given as an input but other options are selected that require it (example: filtering in known splice sites).

If that is not your use case or you are not sure, a bug report can be sent in when working at htttps:/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson24k
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