Question: RNA STAR job error
0
gravatar for k.makwana
5 weeks ago by
k.makwana0
k.makwana0 wrote:

Hello, I am trying to RNA STAR aligner on pair end reads with inbuilt index but I am getting error:

  Transcriptome.cpp:51:Transcriptome: exiting because of INPUT FILE error: could not open input file /cvmfs data.galaxyproject.org/managed/rn
error job rna-seq input hisat2 • 79 views
ADD COMMENTlink modified 5 weeks ago by Jennifer Hillman Jackson23k • written 5 weeks ago by k.makwana0
0
gravatar for Jennifer Hillman Jackson
5 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

I've only seen this error come up when a reference annotation database was not given as an input but other options are selected that require it (example: filtering in known splice sites).

If that is not your use case or you are not sure, a bug report can be sent in when working at htttps:/usegalaxy.org.

https://galaxyproject.org/issues/#usage-problem-reporting

Thanks, Jen, Galaxy team

ADD COMMENTlink written 5 weeks ago by Jennifer Hillman Jackson23k
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