Question: Get Count of lines in a BED data file
0
gravatar for linux-ken
6 months ago by
linux-ken0
linux-ken0 wrote:

I simply want to get a count of rows in a Galaxy output BED file (in this case the number of genes in a given chromosome). I am a new Galaxy user. How can i do this without having to export the BED file for use in another tool?

Thanks

bed file statistics • 260 views
ADD COMMENTlink modified 6 months ago by Bjoern Gruening5.0k • written 6 months ago by linux-ken0
1
gravatar for Bjoern Gruening
6 months ago by
Bjoern Gruening5.0k
Germany
Bjoern Gruening5.0k wrote:

Hi.

You can try the word-count tool or the datamash tools. Both are counting or summarizing columns.

Cheers, Bjoern

ADD COMMENTlink written 6 months ago by Bjoern Gruening5.0k
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