Question: How to add a new data type -- "sai"
0
gravatar for 18Kbeyond
14 months ago by
18Kbeyond20
New York
18Kbeyond20 wrote:

Hi. I need to add a new data type "sai" as an output from bwa aln.

I am reading https://galaxyproject.org/admin/datatypes/adding-datatypes/ but I am not sure what to do for step 3. As I don't need to upload sai files for now I am skipping step 2.

I have done step 1 -- I added the line below to the datatypes section in ./config/datatypes_conf.xml.sample file.

<datatype extension="sai" type="galaxy.datatypes.binary:Sai" subclass="True"/>

My thought is that since it's a binary file like bam, I need to write something similar to what is done to bam in binary.py file and registry.py file under lib/galaxy/datatypes/ directory

sai data type • 378 views
ADD COMMENTlink modified 14 months ago • written 14 months ago by 18Kbeyond20
0
gravatar for 18Kbeyond
14 months ago by
18Kbeyond20
New York
18Kbeyond20 wrote:

I did these and it works

In binary.py file, add:

class Sai( Binary ):

"""Class describing a Sai file"""

file_ext = "sai"

In registry.py file, add:

'sai' : binary.Sai(),

ADD COMMENTlink written 14 months ago by 18Kbeyond20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 180 users visited in the last hour