Hi. I have added the lines below to the section I made in config/tool_conf.xml file and "Map with BWA" is showing up on galaxy interface when I execute run.sh. However, I can't pick a genome in the "Using reference genome" box.
What modification should I make in shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/bwa/051eba708f43/bwa/bwa.xml (or is there something else I need to do ) so as to add reference genome path? Thank you.
<tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/bwa/051eba708f43/bwa/bwa.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.15.2"> <tool_shed>toolshed.g2.bx.psu.edu</tool_shed> <repository_name>bwa</repository_name> <repository_owner>devteam</repository_owner> <installed_changeset_revision>051eba708f43</installed_changeset_revision> <id>toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.15.2</id> <version>0.7.15.2</version> </tool>