Question: gtf files for xenopus in galaxy instance
0
gravatar for shamsher jagat
4 months ago by
United States
shamsher jagat590 wrote:

Galaxy has Xenopus tropicalis genome XenTro9 vesrion for alignment, which annotation file (gff or GTF file) should be used after alignment?

ADD COMMENTlink modified 4 months ago by Jennifer Hillman Jackson23k • written 4 months ago by shamsher jagat590
0
gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Reference annotation can be extracted from the UCSC Test Table browser and sent to your active Galaxy history.

How-to

The "Get Data > UCSC" tool available directly within Galaxy accesses the UCSC Main Table browser which does not include this genome build.

Hope this helps! Jen, Galaxy team

ADD COMMENTlink modified 4 months ago • written 4 months ago by Jennifer Hillman Jackson23k

Jen,

Thanks how can I access FASTA file corresponding to above GTF with in Galaxy, I realized that XenTro9 is there when I upload the data but is not available in the listed genome files for HISAt alignments. Thanks

ADD REPLYlink written 4 months ago by shamsher jagat590
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