Question: Fastq to SAM/BAM
0
gravatar for gvacinova
8 months ago by
gvacinova0
gvacinova0 wrote:

Hi, I am trying convert data from fastq to SAM/BAM. I used: NGS: Picard Fastq to SAM. But when I do it there is an error Exit code 1 - what does it mean? Thanks

fastq sam bam • 405 views
ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson25k • written 8 months ago by gvacinova0
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi,

The problem was the quality score encoding choice selected on the tool form. It looks like you have determined this as well and rerun successfully. Glad all worked out!

Fastq FAQ: https://galaxyproject.org/support/fastqsanger/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
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