Question: Fastq to SAM/BAM
0
gravatar for gvacinova
12 weeks ago by
gvacinova0
gvacinova0 wrote:

Hi, I am trying convert data from fastq to SAM/BAM. I used: NGS: Picard Fastq to SAM. But when I do it there is an error Exit code 1 - what does it mean? Thanks

fastq sam bam • 139 views
ADD COMMENTlink modified 12 weeks ago by Jennifer Hillman Jackson23k • written 12 weeks ago by gvacinova0
0
gravatar for Jennifer Hillman Jackson
12 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:

Hi,

The problem was the quality score encoding choice selected on the tool form. It looks like you have determined this as well and rerun successfully. Glad all worked out!

Fastq FAQ: https://galaxyproject.org/support/fastqsanger/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 12 weeks ago by Jennifer Hillman Jackson23k
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