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Question: Trimmomatic data on Fastqc
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gravatar for aman.deep13023
14 months ago by
aman.deep13023 • 0
aman.deep13023 • 0 wrote:

Hell, i am unable to load "Trimmomatic on Fastq groomer on data file"on Fastqc. it show Fatal error on this. i am trying to find the Fastqc result on Trimmomatic files?
fastq fastqc fastqsanger trimmomatic • 547 views
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written 14 months ago by aman.deep13023 • 0

Please post the entire error message.

ADD REPLY • link written 14 months ago by Devon Ryan • 1.9k
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gravatar for Jennifer Hillman Jackson
14 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi - I checked your history and did not find a FastQC tool run/result datasets in the history. There is only one history with content associated with your account at https://usegalaxy.org. I do see some Trimmomatic result datasets. A sample from one of those datasets runs through FastQC without errors.

To troubleshoot:

If working at the public Galaxy Main server at https://usegalaxy.org:

  1. Are you trying to run FastQC? Using the existing Trimmomatic output datasets as input?
  2. Which dataset are you selecting as input to FastQC (the dataset number in the history)?
  3. Should that not be your use case, could you explain more about what you are doing when the error comes up?

If working somewhere else:

  1. What is the URL (public server)? Or perhaps this is occurring on local, docker, or cloud Galaxy?
  2. Sharing the error message as Devon suggests will help.
  3. Or, if there is no output from FastQC yet, could you explain the same as in item 3 above. Specifically, what action produces the error and the full error message? This in a pop-up window or ?

Thanks! Jen, Galaxy team
ADD COMMENT • link modified 14 months ago • written 14 months ago by Jennifer Hillman Jackson ♦ 25k
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