Question: Galaxy-using trimmomatics with ChIP seq pair ended (only one file with both reads)
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gravatar for jramo033
11 months ago by
jramo0330
jramo0330 wrote:

I am trying to run Trimmomatics in Galaxy under "pair end (as collection)" for afastqsanger.gz file with both reads and I got the message "no fastqsanger.gz dataset collection available". What should I do? split the file into two different files? if so, how can I do it? Is there any other way?

chip-seq • 305 views
ADD COMMENTlink modified 11 months ago by Jennifer Hillman Jackson25k • written 11 months ago by jramo0330
0
gravatar for Jennifer Hillman Jackson
11 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Check the metadata for your input dataset collection - it should be assigned the fastqsanger.gz datatype.

How-to:

Thanks, Jen, Galaxy team

ADD COMMENTlink written 11 months ago by Jennifer Hillman Jackson25k
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