Question: problem in transcriptome assembly
gravatar for majeedaasim
3 months ago by
majeedaasim0 wrote:

I successfully assembled my raw reads to generate assembly. But when I concatenate the reads, the assembly fails in Trinity . I used Trinity on galaxy as well but there too it failed. what could be the problem.


assembly • 112 views
ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson23k • written 3 months ago by majeedaasim0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson23k wrote:


The original reads should be entered individually in fastq format when using Trinity in Galaxy. Trinity command-line will also accept fasta format but individual reads are still the expected input.

Trinity manual:

Galaxy tutorials:

Hope this helps, Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson23k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 107 users visited in the last hour