Question: problem in transcriptome assembly
gravatar for majeedaasim
9 months ago by
majeedaasim0 wrote:

I successfully assembled my raw reads to generate assembly. But when I concatenate the reads, the assembly fails in Trinity . I used Trinity on galaxy as well but there too it failed. what could be the problem.


assembly • 222 views
ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson24k • written 9 months ago by majeedaasim0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson24k wrote:


The original reads should be entered individually in fastq format when using Trinity in Galaxy. Trinity command-line will also accept fasta format but individual reads are still the expected input.

Trinity manual:

Galaxy tutorials:

Hope this helps, Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson24k
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