Question: is mothur tool working ?
0
gravatar for vtrevino
14 months ago by
vtrevino30
vtrevino30 wrote:

I tried to use mothur fastq.info) and I got an library access error:

Fatal error: Exit code 127 () mothur: error while loading shared libraries: libboost_iostreams.so.1.57.0: cannot open shared object file: No such file or directory mothur: error while loading shared libraries: libboost_iostreams.so.1.57.0: cannot open shared object file: No such file or directory

Is it a problem with UseGalaxy.org ?

mothur • 507 views
ADD COMMENTlink modified 12 months ago by Jennifer Hillman Jackson25k • written 14 months ago by vtrevino30
0
gravatar for Saskia Hiltemann
14 months ago by
Saskia Hiltemann70 wrote:

Note: somebody else reported an issue with boost in relation to mother to me today and for them it was due to the order of conda channels (bioconda had to come before conda-forge) ..no clue if it could be the same on usegalaxy but could be something to check/a place to start

ADD COMMENTlink modified 14 months ago • written 14 months ago by Saskia Hiltemann70
0
gravatar for Jennifer Hillman Jackson
12 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Update: The Mothur tools were just corrected at Galaxy Main (https://usegalaxy.org). Details: https://biostar.usegalaxy.org/p/24985/#25076

ADD COMMENTlink written 12 months ago by Jennifer Hillman Jackson25k

I got the same error on my local Galaxy? All Mothur tools was installed ok and green. How can I fix the issue?

ADD REPLYlink written 11 months ago by vebaev130

The problem might be the same as the one Saskia mentions and that Nate also used to solve the problem at https://usegalaxy.org (see the linked ticket for details).

Maybe compare your installed packages to the log posted for Main? Then install what is needed or delete, reset your conda dependency resolvers and try the install again that way?

ADD REPLYlink modified 11 months ago • written 11 months ago by Jennifer Hillman Jackson25k

I will try. How exactly to reset conda dependances as I'm not so into the Galaxy inside kitchen :)

ADD REPLYlink written 11 months ago by vebaev130
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