Question: How to do multiple shuffling using Galaxy (ShuffleBed)?
0
gravatar for annamariabugaj
7 days ago by
annamariabugaj0 wrote:

I would like to perform enrichment analysis and I need to shuffle data 1000 times and then intersect the 1000 outputs with particular genomic features - is there any way I can do it using Galaxy?

bedtools • 52 views
ADD COMMENTlink modified 6 days ago by Jennifer Hillman Jackson22k • written 7 days ago by annamariabugaj0
0
gravatar for Jennifer Hillman Jackson
6 days ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

Try using a dataset collection. You can group the genomes into a collection then run through multiple tools in batch, within a workflow or outside of one.

This is how to use collections: https://galaxyproject.org/tutorials/collections/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 6 days ago by Jennifer Hillman Jackson22k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 120 users visited in the last hour