Question: Heatmap using cummeRbund
0
gravatar for mvinas
6 months ago by
mvinas20
mvinas20 wrote:

Hello,

I want to do a heatmap using cummeRbund.

Is it possible to select a set of genes (for example only the significantly expressed ones) or it is only possible to do it one by one?

Thanks in advance,

Maria Vinas

rna-seq • 187 views
ADD COMMENTlink modified 6 days ago by domi8410 • written 6 months ago by mvinas20
0
gravatar for domi84
6 days ago by
domi8410
Glasgow University
domi8410 wrote:

Hi, you can use cummeRbund directly on Galaxy only selecting genes one by one, otherwise you need to download and use cummeRbund with R. As an alternative I wrote a Python module named Papillon available here . Should be easy to use. Best Regards Dom

ADD COMMENTlink written 6 days ago by domi8410
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 120 users visited in the last hour