I would like to filter my VCF file with SNPsift for DP, Quality, SRP, SAP and Effect (remove all the intergenic_region(MODIFIER||||||||||1).
The first problem is that I can not filter for all of them together, I followed the instruction, but its not working. I can just filter for one of them at the time.
the second problem is I can not filter for Effect, I tried several things, but its not working.
I appreciate your thought or experience.