Question: Install dependencies for local galaxy installation
0
gravatar for parikhh1
6 months ago by
parikhh10
India
parikhh10 wrote:

I am trying to install some packages on local galaxy instance but, I am unable to resolve dependencies required for some packages.

I get stuck at below page.

*"By default Galaxy will install all needed dependencies for the repository. See the dependency resolver documentation . You can control how dependencies are installed (this is an advanced option, if in doubt, use the default) Shed tool configuration file:

config/shed_tool_config.xml

Your Galaxy instance is configured with 1 shed-related tool configuration file, so repositories will be installed using its tool_path setting. "*

Am I doing something wrong here? I am have been looking at documents but I was unable to figure out the problem.

Can anyone help with this?

assembly galaxy • 185 views
ADD COMMENTlink modified 6 months ago • written 6 months ago by parikhh10

Can you please link what tool you are trying to install and what is your version of Galaxy?

ADD REPLYlink written 6 months ago by Martin Čech ♦♦ 4.2k

I am trying to install QIIME packages. While installing the packages, I see error message for all dependencies.

Here is the error message what I see.

This repository is not installed correctly (see the Repository installation error below). Choose Reset to install from the Repository Actions menu, correct problems if necessary and try installing the repository again.

Installed tool shed repository 'qiime_alpha_rarefaction'

Tool shed: toolshed.g2.bx.psu.edu

Name: qiime_alpha_rarefaction

Description:

Revision: bf66460f68c1

Owner: iuc

Location: /home/penguin/apps/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_rarefaction/d493a0d5d5f5/qiime_alpha_rarefaction

Deleted: False

ADD REPLYlink modified 6 months ago • written 6 months ago by parikhh10

What version is your Galaxy. Do you know if it has Conda enabled? Could you share the error messages? Are there any errors in the Galaxy log?

ADD REPLYlink modified 6 months ago • written 6 months ago by Martin Čech ♦♦ 4.2k
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