Question: FIle transfer from GEO to
gravatar for stuti.mehta
9 weeks ago by
stuti.mehta0 wrote:

I'm trying to import some public GEO data into - specifically, the mouse RNA-seq data from GSE79552. When I go to 'get data', then EBI-SRA, input GSE79552, the search results for mouse RNA-seq do not have a download link (ftp, galaxy, nothing) - whereas I do see SRA files (and can download them) on the NCBI website.

1) So why are only some files from the same study available to be imported via EBI-SRA? Is there anything I can do to rectify this?

2) Is there another way to get the data to usegalaxy? Or must I download all these files individually, then upload them into usegalaxy?

Thanks for any pointers you can provide.

rna-seq galaxy • 65 views
ADD COMMENTlink modified 9 weeks ago by Jennifer Hillman Jackson22k • written 9 weeks ago by stuti.mehta0
gravatar for Jennifer Hillman Jackson
9 weeks ago by
United States
Jennifer Hillman Jackson22k wrote:


To import this data directly into Galaxy (avoiding downloads/uploads), please use the tools under this group instead with the SRA identifiers: NCBI SRA Tools

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 weeks ago by Jennifer Hillman Jackson22k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 56 users visited in the last hour