Similar posts • Search »

• Cufflinks analysis remains in que without running
  Hi Team, Loving Galaxy! When I run my data, I use the same protocol for most all datasets. Howev...
• Query for inputting Hisat2 BAM with dataset collections for Stringtie analysis
  Hi, I have data set collections ( 3 biological replicates) that I could run on HiSAT2 and I have...
• Cufflink not running
  Dear galaxy admin and user, Cufflink is not running for two particular datasets. While cufflink ...
• How to find and extract novel transcript from cufflink and cuffdiff.
  I am analyzing Arabidopsis Rnaseq data. I was running Tophat and cufflinks, but after that I don'...
• Cufflink, cuffmerge, cuffdiff doesn't work (gray queued jobs)
  I run a work using cufflink yesterday. I have not get the data yet. The status didn't change int...
• cufflinks not running
  I am trying to upload my data for cufflinks at usegalaxy,but its not runnng.kindly help
• cufflinks running problem
  Hello, I´m having problems in running Cufflinks. Yesterday morning I used the Tophat accepted hi...
• Tophat vs HISAT
  Hi, I've been using Tophat to align RNA-seq reads followed by Cufflinks to estimate FPKM. Now tha...
• Alignment summary for HISAT?
  Hi, I'm using HISAT to do my alignment. According to the documentation, when you run HISAT outsi...
• Problem with HISAT
  Hi, Im trying to run a custom workflow for RNA-seq data structured as follows: 1. Inputs: refer...
• cufflink and tophat queueing more than 24hrs
  cufflink queue is not working. I have been trying to run tophat and cufflink since last 2 days, n...
• Running Cufflinks On Bacterial Rnaseq Data
  I am attempting to run Cufflinks on Galaxy main to analyze my E. coli RNAseq data. I have mapped...
• cufflink trancript analysis
  Dear sir, i have run my cufflink analysis on friday but my job does not execute... please help me...
• Cufflinks Help
  Hi All, I am trying to analyse some human RNA-seq dataset which is in BAM format to generate FPK...
• HISAT seems to assign wrong XS tag value to some reads of stranded RNAseq data
  Hi All, I have some paired end stranded RNAseq data prepared using an Illumina TruSeq Stranded m...
• No Cufflinks data
  Hello, I have been trying to use Cufflinks for my files from FasqToSam but I I have not been ab...
• Is the public server still planning to implement HISAT?
  Is the public server still planning to implement HISAT anytime soon? I haven't been using Galaxy ...