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Question: Run time of processes in Galaxy
1
gravatar for ropolocan
18 months ago by
ropolocan • 30
Canada
ropolocan • 30 wrote:

Hello everyone,

Where can I see how long did it take for a step that I ran in Galaxy to complete? Is this information available somewhere in the interface or via the API?

Thank you for your help
runtime • 529 views
ADD COMMENT • link •
modified 18 months ago by Jennifer Hillman Jackson ♦ 25k • written 18 months ago by ropolocan • 30
1
gravatar for Jennifer Hillman Jackson
18 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Within the UI: Click on the "i" information icon within the dataset for the job. There is much information. "Job Runtime" is what you are looking for:

Job Metrics

core

Cores Allocated 11
Job End Time    2017-05-11 15:40:20
Job Runtime (Wall Clock)    15 minutes
Job Start Time  2017-05-11 15:25:07

cpuinfo

Processor Count 64

meminfo

Total System Memory 2.9 TB
Total System Swap   16.4 GB

API/Database: This information is within the Galaxy database, so an API query would be possible. I can't definitively confirm if this is the correct query or not yet this is probably it: https://docs.galaxyproject.org/en/master/lib/galaxy.webapps.galaxy.api.html#galaxy.webapps.galaxy.api.jobs.JobController.show

I'll also ask if someone else on the team knows. Any other Galaxy developers reading this are also welcome to post.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 18 months ago by Jennifer Hillman Jackson ♦ 25k
1

Hi Jennifer. Thank you very much for your answer. I don't know if it is the particular Galaxy instance that I am using, but I do not see that information when I click on the i icon. I might have to contact the administrator. Thank you very much for your help!

ADD REPLY • link modified 18 months ago • written 18 months ago by ropolocan • 30
1

Yes, this information is available to users set as admin on the Galaxy server in use. Hope yours is able to help! Jen

ADD REPLY • link written 18 months ago by Jennifer Hillman Jackson ♦ 25k

Thank you for reply, Jennifer!

ADD REPLY • link written 18 months ago by ropolocan • 30
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