Question: Run time of processes in Galaxy
1
gravatar for ropolocan
16 months ago by
ropolocan30
Canada
ropolocan30 wrote:

Hello everyone,

Where can I see how long did it take for a step that I ran in Galaxy to complete? Is this information available somewhere in the interface or via the API?

Thank you for your help

runtime • 453 views
ADD COMMENTlink modified 16 months ago by Jennifer Hillman Jackson25k • written 16 months ago by ropolocan30
1
gravatar for Jennifer Hillman Jackson
16 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Within the UI: Click on the "i" information icon within the dataset for the job. There is much information. "Job Runtime" is what you are looking for:

Job Metrics

core

Cores Allocated 11
Job End Time    2017-05-11 15:40:20
Job Runtime (Wall Clock)    15 minutes
Job Start Time  2017-05-11 15:25:07

cpuinfo

Processor Count 64

meminfo

Total System Memory 2.9 TB
Total System Swap   16.4 GB

API/Database: This information is within the Galaxy database, so an API query would be possible. I can't definitively confirm if this is the correct query or not yet this is probably it: https://docs.galaxyproject.org/en/master/lib/galaxy.webapps.galaxy.api.html#galaxy.webapps.galaxy.api.jobs.JobController.show

I'll also ask if someone else on the team knows. Any other Galaxy developers reading this are also welcome to post.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 16 months ago by Jennifer Hillman Jackson25k
1

Hi Jennifer. Thank you very much for your answer. I don't know if it is the particular Galaxy instance that I am using, but I do not see that information when I click on the i icon. I might have to contact the administrator. Thank you very much for your help!

ADD REPLYlink modified 16 months ago • written 16 months ago by ropolocan30
1

Yes, this information is available to users set as admin on the Galaxy server in use. Hope yours is able to help! Jen

ADD REPLYlink written 16 months ago by Jennifer Hillman Jackson25k

Thank you for reply, Jennifer!

ADD REPLYlink written 16 months ago by ropolocan30
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