Question: using snpEff via galaxy
0
gravatar for mr.donmez.emre
13 months ago by
mr.donmez.emre0 wrote:

ı have A question about Annotating variants with SnpEff following this tutorial (https://galaxyproject.org/tutorials/var_dip/)

I dont have any genome source availabile in galaxy :: what is the reason)?

snp galaxy • 348 views
ADD COMMENTlink modified 13 months ago by Martin Čech ♦♦ 4.6k • written 13 months ago by mr.donmez.emre0
1
gravatar for Martin Čech
13 months ago by
Martin Čech ♦♦ 4.6k
United States
Martin Čech ♦♦ 4.6k wrote:

Do you mean reference genome? Galaxy does not ship with reference data ready (because e.g. Main Galaxy at usegalaxy.org has 4 TB of it) - so if you are using other/local Galaxy you need to obtain it separately. The best way is using Data Manager tools. https://galaxyproject.org/admin/tools/data-managers/

ADD COMMENTlink written 13 months ago by Martin Čech ♦♦ 4.6k
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