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Question: Tool to catalog SNPs
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gravatar for tvillanueva
20 months ago by
tvillanueva • 0
tvillanueva • 0 wrote:

Is there a way in which I can catalog SNPs on Galaxy? I am attempting to use my BAM file, along with my reference genome and am having a hard time finding a tool in which it can not only identify the most frequent SNP, but also catalog them (if existent).

snp annotation • 509 views
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modified 20 months ago by Jennifer Hillman Jackson ♦ 25k • written 20 months ago by tvillanueva • 0
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gravatar for Jennifer Hillman Jackson
20 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Please see this variant discovery pipeline for SNP summary and annotation tool options: https://galaxyproject.org/tutorials/var_dip/

Alternate methods are covered in other tutorials. Please see: https://galaxyproject.org/learn/

Thanks, Jen, Galaxy team
ADD COMMENT • link written 20 months ago by Jennifer Hillman Jackson ♦ 25k
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