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Question: Trinity Assembly - data files too big
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gravatar for clogan
20 months ago by
clogan • 0
clogan • 0 wrote:

I'd like to run a Trinity de novo assembly in Galaxy. My left and right concatenated files are ~27GB each and I have uploaded them via ftp. However when I load them into my workspace they are automatically being unzipped to two 127GB files. This freezes my Galaxy account because it is above the disk space quota. Is there a way to prevent Galaxy from automatically unzipping my files or another work around? Thank you!
trinty • 592 views
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modified 20 months ago by Mo Heydarian ♦ 830 • written 20 months ago by clogan • 0
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gravatar for Mo Heydarian
20 months ago by
Mo Heydarian ♦ 830
United States
Mo Heydarian ♦ 830 wrote:

Hello, First, please try clearing out datasets from histories you no longer require. If this is not possible, please email galaxy-bugs@bx.psu.edu with a short request to have your quota increased.

If you may be working with more large datasets, you could consider using Galaxy with Cloudman on a cloud provider such as Amazon Web Services. These instances are scalable up to 16 TB and can persist for as little or as long as you like.

Thanks for using Galaxy!

Cheers, Mo Heydarian
ADD COMMENT • link written 20 months ago by Mo Heydarian ♦ 830
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