Question: Bacterial RNAseq in Galaxy
0
gravatar for shamsher jagat
10 months ago by
United States
shamsher jagat590 wrote:

Is there a workflow to follow alignment of bacterial RNAseq. I want to align FAStq file and then find out level of rRNA and small RNA in the samples.

Thanks

rna-seq • 496 views
ADD COMMENTlink modified 10 months ago by Jennifer Hillman Jackson23k • written 10 months ago by shamsher jagat590
0
gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Please see the RNA-seq tutorials available here: https://new.galaxyproject.org/learn/

For bacterial genomes, Bowtie can be used instead of Tophat for mapping.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 10 months ago by Jennifer Hillman Jackson23k
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