Question: Bacterial RNAseq in Galaxy
0
gravatar for shamsher jagat
13 months ago by
United States
shamsher jagat590 wrote:

Is there a workflow to follow alignment of bacterial RNAseq. I want to align FAStq file and then find out level of rRNA and small RNA in the samples.

Thanks

rna-seq • 610 views
ADD COMMENTlink modified 13 months ago by Jennifer Hillman Jackson24k • written 13 months ago by shamsher jagat590
0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Please see the RNA-seq tutorials available here: https://new.galaxyproject.org/learn/

For bacterial genomes, Bowtie can be used instead of Tophat for mapping.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 105 users visited in the last hour