Question: how to get gene name in varinat anlysis results
gravatar for prasupav1994
9 months ago by
prasupav19940 wrote:

hellow sir/ madum i got vcf file ofter running freebayes ,i got position of the gene actully i need gene name can anyone help me to get gene name from that as soon as possible

snp galaxy • 318 views
ADD COMMENTlink modified 9 months ago by Jennifer Hillman Jackson23k • written 9 months ago by prasupav19940
gravatar for Jennifer Hillman Jackson
9 months ago by
United States
Jennifer Hillman Jackson23k wrote:


If the VCF data is associated with hg19 and you are working at, the tool ANNOVAR can be used to link in gene names. Other genomes are supported by the tool for use in a local or cloud Galaxy. See the help at the bottom of the tool form for details.

Or you can use SnpEff, Gemini, and other related tools to annotate and parse the data further. See this tutorial for example workflows:

Thanks, Jen, Galaxy team

ADD COMMENTlink written 9 months ago by Jennifer Hillman Jackson23k
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