Question: TopHat running since Saturday night
0
gravatar for kuk2
10 months ago by
kuk220
kuk220 wrote:

Hi, A TopHat job keeps running since Saturday night. Similar jobs worked in 3 hours before this job. Is there anything wrong? I am using Galaxy main. Thanks,

rna-seq tophat galaxy • 342 views
ADD COMMENTlink modified 10 months ago • written 10 months ago by kuk220

This job is still running.

ADD REPLYlink modified 10 months ago • written 10 months ago by kuk220
0
gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

I see that you posted that the job completed, but then later changed your comment. So I am not sure of the status now, but this is what to do (below) if jobs are queued - for you and others:

I double checked and there are no known issues with job execution (however there were some delays last week/weekend - now resolved). The backlog of jobs is processing. Allow the job to stay queued and eventually execute. Avoid deleting/restarting as this only extends wait time (the job is moved back to the end of the queue). https://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute

Thanks! Jen, Galaxy team

ADD COMMENTlink modified 10 months ago • written 10 months ago by Jennifer Hillman Jackson23k

This job is still running. Should I still wait?

ADD REPLYlink written 10 months ago by kuk220

For queued (grey) jobs, allow this to queue/process. The queue wait time should get better during the day due to changes that were made to the server earlier this morning.

For yellow (executing) jobs, allow that to process. This indicates that the cluster is doing the analysis.

ADD REPLYlink written 10 months ago by Jennifer Hillman Jackson23k
0
gravatar for kuk2
10 months ago by
kuk220
kuk220 wrote:

Both jobs finished this afternoon. I appreciate your followup.

ADD COMMENTlink written 10 months ago by kuk220
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