Question: wig to bigwig format in galaxy, unavailable genome
0
gravatar for klocko
17 months ago by
klocko0
klocko0 wrote:

Hi,

I would like to convert a .wig file to a .bigwig file. Should be straightforward, but I am running into the problem that the .wig files I have are from a species not found within your genome database/build list (you have the "crab-eating macaque" genome but not the filamentous fungus model organism Neurospora crassa [used to discover the one-gene one-enzyme Nobel prize by Beadle and Tatum]?).

The create genome help webpage only provides information on how to either choose an Admin-created genome or create your own, but I cannot choose my own genome within the wigtobigwig converter.

Can the admin team add my genome to their list? How do I go about making that request? Or how do I choose my own input genome from my datasets in this program? Thanks.

Andy

software error • 421 views
ADD COMMENTlink modified 16 months ago • written 17 months ago by klocko0
0
gravatar for Jennifer Hillman Jackson
16 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Create a Custom Build from your Custom Reference Genome. Then assign it as the database metadata attribute to datasets as needed (click on pencil icon to assign - your Custom Builds are added to the list if genomes).

Some tools use the database assignment to access required genome details.

How-to: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Hope this helps! Jen, Galaxy team

ADD COMMENTlink modified 16 months ago • written 16 months ago by Jennifer Hillman Jackson25k
0
gravatar for klocko
16 months ago by
klocko0
klocko0 wrote:

Thank you, Jennifer. Your comments helped me make a "custom build" under the users menu, for which I was then able to use with my programs.

Andy

ADD COMMENTlink written 16 months ago by klocko0

Good news, very glad this worked out for you! Jen

ADD REPLYlink written 16 months ago by Jennifer Hillman Jackson25k
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