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• Question About Plotting Circos Plot
  I wonder if is it possible to visualize mutation data in circular plot termed as circos plot e.g ...
• Mapping quality plot of BAM file
  I'm interested in a specific genome region, is there a way/tool to make trackster track/plot/hist...
• Is there an alternative tool to plot RNA-Seq differential expression than cummeRbund?
  I have some results from cuffdiff to plot but I cant use the cummeRbund, is there another tool ...
• FastQC: Whisker plot interpretation-upper and lower quartile values l
  Hiii, i have a bit problem while interpreting Whisker plot from FASTQC tool which i got from bam ...
• Tools from Tool shed
  How can I connect and import proteomics tools into galaxy from toolshed? Thanks Maha
• plotting multiple bigwigs in agregate plots
  What's the right tool to plot multiple bigwigs around a reference point like TSS? Can you help me...
• Finding a public galaxy instance with a specific tool
  Hi, I've had this question several times over the last couple of years - is there a way to find ...
• Error of pushing changes to Tool Shed repository
  Hello Galaxy, When I pushed changes from my development environment to my Tool Shed repository u...
• Install a tool from the ToolShed to Galaxy
  Hi I want to add annotateMyIDs from tool shed to my usegalaxy tool. Please help. Thanks
• Circos plot with phage
  Hello guys! I´ve working in phage sequencing and I want to know if there´s a galaxy tool or a se...
• Installing tools from Tool shed into galaxy - Public versus private instances
  I am using a public instance of Galaxy. I need to install a new tool from the Tool Shed into this...
• Cummerbund isnt working, none of the plots are working
  Hi people, I did the analysis of differential expression with cuffdiff but when I try to plot th...
• how to Installing Tools into Galaxy from Tool Shed
  I can't install tools from tool shed to my galaxy unless I become a admin user. does that means ...
• how i can install tool from galaxy shed to galaxy
  hi i want install some tools in galaxy from galaxy shed when i select interesting tool such as de...
• Making PNG figures from plots in R from toolshed (without X11)
  Hi everyone, I'm encountering problems when I want to export a plot from R into a PNG, using sev...
• Data anaylsis using PCA plot
  Hello, I am trying to make a PCA plot of my data but I keep getting the PCA plot of my samples o...
• Galaxy error--"Misconfiguration of the Galaxy job running system"
  Dear administrators, I am from Edinburgh, UK. I ran into the same errors while I was trying to s...
• Is galaxy create the binaries at the time of installing any tool from galaxy tool shed?
  Hi all, I upload my tool on galaxy testtoolshed.g2.bx.psu.edu  Can anyone tell me, when we inst...
• Problem with Plotting tool
  I need to make a rarefaction curve and i´m want to to this: Plotting tool with the followin...
• Problem With New Tool Shed
  Hi all, I tried the latest stable version of Galaxy: http://wiki.g2.bx.psu.edu/News%20Briefs/201...
• Installing New Tools From The Tool Shed
  Hi! Ok, I know many people had the same issue, but I just can't figure what's going on. I'm quit...