Dear Biostars/Galaxy Friends, Hi
I am using
AddOrReplaceReadGroups in online galaxy for two BAM files and all the options are on "Auto" mode (this is a part of a Coursera course assignment).
But I received this error:
Fatal error: Exit code 1 () Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/scratch -Xmx7680m -Xms256m ERROR: Option 'RGPU' is required. USAGE: AddOrReplaceReadGroups [options]
Please help me in this regard.
NOTE: this is the pipeline I am running:
importing Data (6 fastq files) into Galaxy -> fastQC quality control for each -> fastq converting -> map with BWA for illumina to hg19 and BAM file creation ->AddOrReplaceReadGroups ->